easyRNASeq defunct annotation methods

fetchAnnotation-defunct

knownOrganisms-defunct

The <code>fetchAnnotation</code> and <code>knownOrganisms</code> function are now
defunct. The <code>fetchAnnotation</code> function has been replaced by the
<code><a href="/link/getAnnotation?package=easyRNASeq&version=2.8.2&to=easyRNASeq%3AeasyRNASeq-annotation-methods" rd-options="easyRNASeq:easyRNASeq-annotation-methods" data-mini-rdoc="easyRNASeq:easyRNASeq-annotation-methods::getAnnotation">getAnnotation</a></code> method.

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

easyRNASeq defunct annotation methods function

The <code>fetchAnnotation</code> and <code>knownOrganisms</code> function are now
defunct. The <code>fetchAnnotation</code> function has been replaced by the
<code><a href="getAnnotation" rd-options="easyRNASeq:easyRNASeq-annotation-methods">getAnnotation</a></code> method.

easyRNASeq defunct annotation methods: Defunct annotation function

Description

Arguments